| detectortype |
set detectortype (and goniostattype) |
| dethor |
set horizontal dimension |
| detver |
set vertical dimension |
| dist |
set detector distance |
| gain |
set detector gain |
| goniostattype |
set goniostattype |
| ignore gain |
Do/DoNot ignore gain from boxfile |
| ignore incidencecoefficient |
Do/DoNot ignore incidence coefficient from boxfile |
| ignore polarisation |
Do/DoNot ignore polarisation information from boxfile |
| incidencecoefficient |
incidence coefficient. Corrects for incidence angle |
| polarisation |
set beam polarisation |
| swing |
set detector swing angle |
| pointspreadgamma |
sets gamma for pointspreadtype=lorentz |
| pointspreadmoment |
when to apply pointspread |
| pointspreadthreshold |
controlls the extent of the pointspread |
| pointspreadtype |
sets pointspreadtype |
| facetest |
consistency check |
| model |
select model |
| readcorners |
reads a list of corners |
| readfaces |
read list of faces in laboratory coordinates |
| readins |
read list of faces in h,k,l |
| xa |
xtal dimension |
| xb |
xtal dimension |
| xc |
xtal dimension |
| xrot |
initial xtal rotation around xtalax |
| xrotx |
initial xtal rotation around x-axis |
| xroty |
initial xtal rotation around y-axis |
| xrotz |
initial xtal rotation around z-axis |
| xtalax |
xtal rotation axis |
| xtalscale |
xtal size scale factor |
| xtalshift |
change crystal position |
| zero |
set almost-zero variables |
| focfile |
read focus corners from a file |
| focus convergent |
select beam type |
| focus dist |
set focus distance |
| focus focaldist |
set focus focus (convergent beam) |
| focus focalradius |
set focus focus dimension (convergent beam) |
| focus length |
set focus length |
| focus slitdist |
distance between slits and xtal |
| focus slithor |
slit aperture |
| focus slitver |
slit aperture |
| focus takeoff |
set focus takeoff angle |
| focus width |
set focus width |
| ignore focus |
Do/DoNot ignore focus description from boxfile |
| focustype |
set focus type |
| ignore lambda |
Do/DoNot ignore lambda information from boxfile |
| lambdaadd |
add a wavelength record to the spectrum |
| lambdacalcmean |
Calculate weighted and unweighted average wavelength |
| lambdainit |
clears the spectrum |
| lambdameanmid |
set weighted and unweighted average wavelength |
| lambdaprint |
print all wavelengths |
| lambdarange |
set threshold for intermediate wavelengths |
| lambdasigma |
set sigma for a wavelength record |
| lambdavalue |
set wavelengths in the spectrum |
| lambdaweight |
set relative weight for a wavelength record |
| target |
set lambda according to target material |
| targetname |
sets target material name (without setting lambda) |
| latt |
set amount of lattice distorion |
| latthigh |
upper limit of lattice distorion |
| lattlow |
low limit of lattice distorion |
| latttype |
set distribution of lattice distortion impacts |
| lattvec |
set lattice distortion direction |
| animo |
set anisotropic mosaicity |
| anivec |
set anisotropic vector |
| mica |
set mica expansion |
| micahigh |
set upper limit on mica distribution |
| micalow |
set lower limit on mica distribution |
| micascale |
mica expansion depends on hkl |
| micatype |
set mica distribution type |
| micavec |
set mica vector |
| mosaic |
set isosotropic mosaicity |
| mosaicadd |
adds a mosaic to the mosaic spectrum |
| mosaictype |
set mosaic distribution type |
| mosaicweight |
set weight of a mosaic in the mosaic spectrum |
| nmosaic |
set number of mosaic vectors |
| onescan |
search mosaicity with lowest fom |
| cell |
input cell parameters |
| centraloverlap |
integrate small cell with corresponding supercell as interfering lattice |
| ignore rmat |
Do/DoNot ignore rmat from boxfile |
| readins |
input cell parameters and face indices |
| rmat |
input orientation matrix |
| adcnoise |
set background noise |
| changecoef |
change Least-Squares fitted coefficients |
| lambdatype |
set lambda sample function |
| lsqtype |
set Least-Squares method |
| maxtry |
set the maximum nr of tries to generate a focus point
in a convergent beam |
| msa |
how to derive σ from Intensity |
| nbtype |
handle neighbour reflections |
| penalty |
increase σ with the quality of the model fit |
| simulate |
set number of simulation points |
| svdtol |
tolerance for Singular Value Decomposition |
| weightscheme |
set weighting scheme |
| cutoff |
sets size of (main and) neighbour reflections |
| diffscale |
sets scaling in slice (obs-calc)/sigma window |
| difftype |
sets type of sigma used in slice (obs-calc)/sigma window |
| manual clear |
clear manual reject list |
| manual overflow |
sets overflow threshold |
| manual reject |
reject a specific pixel |
| nbcovariance |
sets covariance threshold between main and neighbour reflection |
| nbsimfraction |
sets minimum fraction of simulated hits for accepting neighbour reflections |
| nbvolume |
sets minimum volume for accepting neighbour intensities |
| onescan |
search mosaicity/pointspread/lambda3....for lowest fom |
| reject |
set pixel reject threshold |
| zinger |
set zinger reject threshold |
| clear |
clear detector window |
| colour |
set colours |
| intermediate |
what to plot during refinement |
| legenda |
configure content of legenda window |
| newworld |
force new world for xtal window |
| scaletype |
scale scheme for slice windows |
| window autofont |
controls automatic font resize |
| window border |
set subwindow border margin |
| window font |
set font |
| window fraction |
set window dimensions |
| window info |
show window information |
| window label |
specify which subwindows will be labeled |
| window legenda |
set legenda window width |
| window log |
set window log level |
| window padding |
set subwindow padding |
| zoom |
create a zoom window |
| zoomfraction |
set zoom window dimensions |
| zoomtitle |
specify zoom window title |
| creep |
Do/DoNot allow scale factor to grow |
| creepinit |
set initial scale factor |
| boxfixed |
Do/DoNot use box dimensions |
| boxsize |
Set box dimensions |
| square |
DoDoNot use square grid |
| contour |
select contours |
| draw central |
Do/DoNot draw central impact |
| draw contourpoints |
Do/DoNot draw contour points |
| draw grid |
Do/DoNot plot grid |
| draw legenda |
Do/DoNot plot legenda |
| draw profile |
Do/DoNot plot profiles in simulation window |
| draw simulated |
Do/DoNot plot simulated impacts in FLXMN window |
| impact |
select plotting of impacts |
| impactdotsize |
set impact dot size |
| impactlabel |
select plotting of impact labels |
| link |
setup drawing of slice data |
| sampleplot |
Controls plotting of sample points (xtal/focus) |
| unlink |
disable drawing of slice data |
| diffracpos |
Do/DoNot rotate xtal into diffracting position |
| onerot |
rotate crystal 360 degrees |
| plot |
plot xtal in diffracting position |
| plot0 |
plot xtal in goniostat position (but with rotation angle=0) |
| plot000 |
plot xtal with goniostat angles zero |
| view |
set view direction |
| viewrot |
extra vertical rotation |
| xtalplot |
control plotting of axes/facenumber/corners |
| distribution plot |
draw the distribution set by
distribution type |
| distribution autolimit |
Do/DoNot use automatic distribution plot limits |
| distribution fraction |
change window dimension |
| distribution limit |
set distribution plot limits |
| distribution size |
change window dimensions |
| distribution simulate |
Upper limit for distribution spampling |
| distribution title |
sets the title of the distribution window |
| distribution type |
sets the distribution type |
| cntclose |
close cnt file |
| cntfile |
set cnt filename |
| cntwrite |
write observed and simulated slices to cntfile |
| ps |
create snapshot of windows |
| refinewrite |
write refined variables to a file |
| save |
save settings into a file |
| savemeanshift |
Do/DoNot save average shifts |
| sliceclose |
close slice file |
| slicefile |
set slice filename |
| slicewrite |
write observed and simulated slices to file |
| extremeprint |
Select print of extreme vectors |
| noprint |
No contour prints |
| output |
controls amount of output |
| print |
select print of contours |
| printframes |
print the specified frame of all available slices |
| printprojection |
Do/DoNot print projections |
| printslicelimit |
Limit amount of output of
printslices and
printframes |
|
| printslices |
Do/DoNot print observed/simulated slices |
| printxtalsample |
print sample points |
| slicefactor |
multiply printed slices |
| batch |
process a complete boxfile |
| edgefraction |
set edge threshold |
| file |
Read experimental setup and a reflection from boxfile |
| ignore |
Do/DoNot ignore (various) boxdata |
| low |
Do/DoNot use Low data in boxfile |
| loadxtalevc |
Read xtal parameters .evc file |
| readfaces |
read list of faces in laboratory coordinates |
| readins |
read list of faces in h,k,l |
| boxclose |
close boxfile |
| boxnext |
open next boxfile |
| boxopen |
Read experimental setup and first reflection from boxfile |
| autorestore |
reset parameters before new reflection |
| dump |
print all variables |
| fix |
fix variables |
| fomtype |
set minimization function |
| force |
free locked variables |
| free |
free variables |
| intermediate |
what to plot during refinement |
| isigrefine |
set minimum i/sigma for refinement |
| loadrefine |
initialize refinement variables |
| lock |
lock variables |
| ndiv |
set nr of refine repeats |
| randominit |
Do/DoNot reset the random generator |
| refine |
Refine variables |
| refinebox |
read and refine a whole boxfile |
| refinefile |
set refine filename |
| refineshift |
set initial variable shifts |
| refinestatus |
print refined variables |
| refinetol |
set refinement tolerance |
| refinewrite |
write refineable variables to refinefile |
| restore |
restore saved variables |
| shinit |
set initial shift |
| shinitsector |
set initial shift per sector |
| shextra |
change refined shift |
| shiftgrid |
splits detector area into sectors |
| shiftrestfracmin |
minimum threshold for average shifts |
| shiftrmatX |
allow matrix X to shift |
| splitshift |
interfering rmats have their own shift |
| store |
store refined variables |
| storestatus |
print stored variables |
| animate |
Start animation |
| delay |
wait between successive c-vectors |
| longdelay |
wait after incomplete reflection |
| random anivec |
Do/DoNot change anivec |
| random cvector |
Do/DoNot change c-vector |
| random orient |
Do/DoNot change xtal orientation |
| random seed |
set random generator seed |
| randominit |
Do/DoNot reset the random generator |
| step |
set interval for walk |
| thetachilimit |
set maximum theta+chi |
| thmax |
set maximum theta |
| thmin |
set minimum theta |
| walk |
impacts on the whole detector |
| walktype |
set walk type |
| chi |
set angle between normal plane of rotax and c-vector |
| euler |
set goniostat angles |
| goniostat |
set goniostat angles |
| hkl |
set h,k,l |
| hor |
set horizontal impact |
| left |
force left impact |
| next |
set h,k,l and left/right (after
boxopen) |
| phi |
set initial rotation angle around rotaxis |
| pq |
skip reflections until a minimum I/σ is reached
(after boxopen) |
| reflnr |
read h,k,l and left/right
(after boxopen) |
| right |
force right impact |
| rotaxnr |
set rotation axis |
| theta |
set c-vector length |
| ver |
set vertical impact |
| epsilon |
set fibre criterium |
| fibre |
Do/DoNot use fibre |
| fibreaxis |
set fibre axis |
| abort |
Do/DoNot abort on warnings |
| batch |
process one boxfile and create y-file |
| correct |
enable/disable correction |
| exit |
exit program |
| go |
process one reflection |
| help |
start webbrowser |
| listoff |
close impact file |
| liston |
write impacts to file |
| menu |
set some variables |
| pixelsize |
set pixel size and frame width |
| ps |
create snapshot of windows |
| save |
save settings into a file |
| status |
show settings |
| wait |
wait n seconds |
| check |
check various data |
| dump |
print all refineable variables |
| limits |
print array sizes |
| pick |
print window and pixel information |
| trace |
trace program execution |