rmat2pdb commands
You may also visit the explanation of
internal commands: aliases, flowcontrol etc.
List of commands
elementa
Syntax: elementa s
Default: elementa c
Set the element type along the a* axis.
elementb
Syntax: elementb s
Default: elementb n
Set the element type along the b* axis.
elementc
Syntax: elementc s
Default: elementc o
Set the element type along the c* axis.
elementhkl
Syntax: elementhkl s
Default: elementhkl h
Set the element type for the non-axes lattice points
exit
Syntax: exit
Done.
lambda
Syntax: lambda f
Set the wavelength in Ångström.
You may want to use @mapname.
occupancy
Syntax: occupancy f
Default: occupance 1.0
Set the value of the occupancy in the ATOM record of the pdbfile.
rmat
Syntax: rmat name
Read name.rmat
scale
Syntax: scale f
Set the scale factor to scale the c-vectors to the density map
You may want to use @mapname.
thmax
Syntax: thmax f
Set the maximum resolution (in degreees). Reciprocal lattice points will
be generated up to this maximum resolution.
You may want to use @mapname.
write
Syntax: write name
Creates name-axes.pdb,
name-hkl.pdb and
name.scm
You may want to edit mapname.coot
to load name.scm when
starting coot.
rmat2pdb description
from images to density map
EVPY Suite Overview